PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00104.42
Common NameAMTR_s00104p00109130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 354aa    MW: 39306 Da    PI: 10.2199
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00104.42genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.49.1e-21234290257
                                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
                                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                                              +D y+W+KY  ++vkgs++ r +Y+C++a gCp+kk+ve ++++ ++v+itYeg H 
  evm_27.model.AmTr_v1.0_scaffold00104.42 234 SDNYSWKKYSERTVKGSPYLRLFYKCATAeGCPAKKQVEWCKDNINMVTITYEGFHM 290
                                              69************************9888*************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-22227291IPR003657WRKY domain
SuperFamilySSF1182903.66E-19232291IPR003657WRKY domain
SMARTSM007741.4E-18233294IPR003657WRKY domain
PROSITE profilePS5081120.759234294IPR003657WRKY domain
PfamPF031062.8E-18235290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MEKNQSSNPH LQRIEQENKN AITLAHNVLN ILSPYDPNHQ WNTPLRSVTE TKLSKVAKQT  60
INGFQRVITL LDRRGHAVFR RKPSSPSLLD RRDQNLSFPL CQKRPLYPQV SDHYFDCYGR  120
VLNNFQSKME GKRPLVSTEF ASSSMSSFRP LMPPLPAKVN DNKVISRGLP WSYVPIAPVP  180
NREHGSSNGM DGHVGSSEDG TKVAAKYLYC KRKMNIKTSI TVPAISKDLS MTPSDNYSWK  240
KYSERTVKGS PYLRLFYKCA TAEGCPAKKQ VEWCKDNINM VTITYEGFHM NHALAFEAAR  300
IPTIKPDLEL ASSSTVAPAL TPTLTPVPAL TLARARTSAP AHAPPPAPPP SPA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006837799.21e-164PREDICTED: probable WRKY transcription factor 17
TrEMBLW1NXJ20.0W1NXJ2_AMBTC; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.28e-29WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]